Good post by Chris, managed to cover pretty much everything I think, a couple of minor things I'll add
You probably want to raise your coop off the floor as an anti vermin measure (it also provides the chickens with somewhere to shelter in the rain). In the coop I built recently I did this simply by extending the fixing battens 18" below the coop structure to form legs, but you could build some kind of external framework to support the coop if you prefered.
For pop holes I like vertical risers, that way if you ever want to add an automatic opener it's a doddle to do.
Ventilation- when making holes think 'could a weasel get through that', if the answer is yes then mesh it.
On the subject of price and materials, if you are on a tight budget and using ply then you could use shuttering ply instead of WBP ply, it is effectively the same but with a rougher finish (and hence more absorbant when you coat it) but is a fraction of the cost of WBP (sorry if you already know this). I got an 8'X4' 12mm sheet for £13.50 and it was just enough to build a 3-4 bantam house, total cost for it was in the region of £35, it's not great to look at mind but does the job.
Happy building